Downstream Processing Biotechnology Engineering (BT) Notes | EduRev

Biotechnology Engineering (BT) : Downstream Processing Biotechnology Engineering (BT) Notes | EduRev

 Page 1


 
RAJALAKSHMI ENGINEERING COLLEGE, THANDALAM 
DEPARTMENT OF BIOTECHNOLOGY 
FINALYEAR-VII SEMESTER SEC A&B 
BT-2401 DOWNSTREAM PROCESSING 
 
 
 
 
 
 
 
Bachelor of Biotechnology 
DEPARTMENT OF BIOTECHNOLOGY 
 
 
PREPARED BY 
 KAVITHA VIJAYARAGHAVAN(BT102) 
LECTURER  
DEPARTMENT OF BIOTECHNOLOGY 
 
 
Page 2


 
RAJALAKSHMI ENGINEERING COLLEGE, THANDALAM 
DEPARTMENT OF BIOTECHNOLOGY 
FINALYEAR-VII SEMESTER SEC A&B 
BT-2401 DOWNSTREAM PROCESSING 
 
 
 
 
 
 
 
Bachelor of Biotechnology 
DEPARTMENT OF BIOTECHNOLOGY 
 
 
PREPARED BY 
 KAVITHA VIJAYARAGHAVAN(BT102) 
LECTURER  
DEPARTMENT OF BIOTECHNOLOGY 
 
 
 
 
UNIT-1 DOWNSTREAM PROCESSING 
 
Downstream processing refers to the recovery and purification of biosynthetic products, 
particularly pharmaceuticals, from natural sources such as animal or plant tissue or fermentation 
broth, including the recycling of salvageable components and the proper treatment and disposal 
of waste. It is an essential step in the manufacture of pharmaceuticals such as antibiotics, 
hormones (e.g. insulin and human growth hormone), antibodies (e.g. infliximab and abciximab) 
and vaccines; antibodies and enzymes used in diagnostics; industrial enzymes; and natural 
fragrance and flavor compounds. Downstream processing is usually considered a specialized 
field in biochemical engineering, itself a specialization within chemical engineering, though 
many of the key technologies were developed by chemists and biologists for laboratory-scale 
separation of biological products. 
Downstream processing and analytical bioseparation both refer to the separation or purification 
of biological products, but at different scales of operation and for different purposes. 
Downstream processing implies manufacture of a purified product fit for a specific use, generally 
in marketable quantities, while analytical bioseparation refers to purification for the sole purpose 
of measuring a component or components of a mixture, and may deal with sample sizes as small 
as a single cell. 
 Stages in Downstream Processing 
A widely recognized heuristic for categorizing downstream processing operations divides them 
into four groups which are applied in order to bring a product from its natural state as a 
component of a tissue, cell or fermentation broth through progressive improvements in purity 
and concentration. 
Removal of insolubles is the first step and involves the capture of the product as a solute in a 
particulate-free liquid, for example the separation of cells, cell debris or other particulate matter 
from fermentation broth containing an antibiotic. Typical operations to achieve this are filtration, 
centrifugation, sedimentation, flocculation, electro-precipitation, and gravity settling. Additional 
operations such as grinding, homogenization, or leaching, required to recover products from 
solid sources such as plant and animal tissues, are usually included in this group. 
Product Isolation is the removal of those components whose properties vary markedly from that 
of the desired product. For most products, water is the chief impurity and isolation steps are 
designed to remove most of it, reducing the volume of material to be handled and concentrating 
the product. Solvent extraction, adsorption, ultrafiltration, and precipitation are some of the unit 
operations involved. 
Page 3


 
RAJALAKSHMI ENGINEERING COLLEGE, THANDALAM 
DEPARTMENT OF BIOTECHNOLOGY 
FINALYEAR-VII SEMESTER SEC A&B 
BT-2401 DOWNSTREAM PROCESSING 
 
 
 
 
 
 
 
Bachelor of Biotechnology 
DEPARTMENT OF BIOTECHNOLOGY 
 
 
PREPARED BY 
 KAVITHA VIJAYARAGHAVAN(BT102) 
LECTURER  
DEPARTMENT OF BIOTECHNOLOGY 
 
 
 
 
UNIT-1 DOWNSTREAM PROCESSING 
 
Downstream processing refers to the recovery and purification of biosynthetic products, 
particularly pharmaceuticals, from natural sources such as animal or plant tissue or fermentation 
broth, including the recycling of salvageable components and the proper treatment and disposal 
of waste. It is an essential step in the manufacture of pharmaceuticals such as antibiotics, 
hormones (e.g. insulin and human growth hormone), antibodies (e.g. infliximab and abciximab) 
and vaccines; antibodies and enzymes used in diagnostics; industrial enzymes; and natural 
fragrance and flavor compounds. Downstream processing is usually considered a specialized 
field in biochemical engineering, itself a specialization within chemical engineering, though 
many of the key technologies were developed by chemists and biologists for laboratory-scale 
separation of biological products. 
Downstream processing and analytical bioseparation both refer to the separation or purification 
of biological products, but at different scales of operation and for different purposes. 
Downstream processing implies manufacture of a purified product fit for a specific use, generally 
in marketable quantities, while analytical bioseparation refers to purification for the sole purpose 
of measuring a component or components of a mixture, and may deal with sample sizes as small 
as a single cell. 
 Stages in Downstream Processing 
A widely recognized heuristic for categorizing downstream processing operations divides them 
into four groups which are applied in order to bring a product from its natural state as a 
component of a tissue, cell or fermentation broth through progressive improvements in purity 
and concentration. 
Removal of insolubles is the first step and involves the capture of the product as a solute in a 
particulate-free liquid, for example the separation of cells, cell debris or other particulate matter 
from fermentation broth containing an antibiotic. Typical operations to achieve this are filtration, 
centrifugation, sedimentation, flocculation, electro-precipitation, and gravity settling. Additional 
operations such as grinding, homogenization, or leaching, required to recover products from 
solid sources such as plant and animal tissues, are usually included in this group. 
Product Isolation is the removal of those components whose properties vary markedly from that 
of the desired product. For most products, water is the chief impurity and isolation steps are 
designed to remove most of it, reducing the volume of material to be handled and concentrating 
the product. Solvent extraction, adsorption, ultrafiltration, and precipitation are some of the unit 
operations involved. 
Product Purification is done to separate those contaminants that resemble the product very 
closely in physical and chemical properties. Consequently steps in this stage are expensive to 
carry out and require sensitive and sophisticated equipment. This stage contributes a significant 
fraction of the entire downstream processing expenditure. Examples of operations include 
affinity, size exclusion, reversed phase chromatography, crystallization and fractional 
precipitation. 
Product Polishing describes the final processing steps which end with packaging of the product 
in a form that is stable, easily transportable and convenient. Crystallization, desiccation, 
lyophilization and spray drying are typical unit operations. Depending on the product and its 
intended use, polishing may also include operations to sterilize the product and remove or 
deactivate trace contaminants which might compromise product safety. Such operations might 
include the removal of viruses or depyrogenation. 
A few product recovery methods may be considered to combine two or more stages. For 
example, expanded bed adsorption accomplishes removal of insolubles and product isolation in a 
single step. Affinity chromatography often isolates and purifies in a single step. 
Cell disruption is a method or process for releasing biological molecules from inside a cell. 
Choice of disruption method 
The production of biologically-interesting molecules using cloning and culturing methods allows 
the study and manufacture of relevant molecules.Except for excreted molecules, cells producing 
molecules of interest must be disrupted. This page discusses various methods. 
 Major factors 
Several factors must be considered. 
 Volume or sample size of cells to be disrupted 
If only a few microliters of sample are available, care must be taken to minimize loss and to 
avoid cross-contamination. 
Disruption of cells, when hundreds or even thousands of liters of material are being processed in 
a production environment, presents a different challenge. Throughput, efficiency, and 
reproducibility are key factors. 
 How many different samples need to be disrupted at one time? 
Frequently when sample sizes are small, there are many samples. As sample sizes increase, 
fewer samples are usually processed. Issues are sample cross contamination, speed of processing, 
and equipment cleaning . 
Page 4


 
RAJALAKSHMI ENGINEERING COLLEGE, THANDALAM 
DEPARTMENT OF BIOTECHNOLOGY 
FINALYEAR-VII SEMESTER SEC A&B 
BT-2401 DOWNSTREAM PROCESSING 
 
 
 
 
 
 
 
Bachelor of Biotechnology 
DEPARTMENT OF BIOTECHNOLOGY 
 
 
PREPARED BY 
 KAVITHA VIJAYARAGHAVAN(BT102) 
LECTURER  
DEPARTMENT OF BIOTECHNOLOGY 
 
 
 
 
UNIT-1 DOWNSTREAM PROCESSING 
 
Downstream processing refers to the recovery and purification of biosynthetic products, 
particularly pharmaceuticals, from natural sources such as animal or plant tissue or fermentation 
broth, including the recycling of salvageable components and the proper treatment and disposal 
of waste. It is an essential step in the manufacture of pharmaceuticals such as antibiotics, 
hormones (e.g. insulin and human growth hormone), antibodies (e.g. infliximab and abciximab) 
and vaccines; antibodies and enzymes used in diagnostics; industrial enzymes; and natural 
fragrance and flavor compounds. Downstream processing is usually considered a specialized 
field in biochemical engineering, itself a specialization within chemical engineering, though 
many of the key technologies were developed by chemists and biologists for laboratory-scale 
separation of biological products. 
Downstream processing and analytical bioseparation both refer to the separation or purification 
of biological products, but at different scales of operation and for different purposes. 
Downstream processing implies manufacture of a purified product fit for a specific use, generally 
in marketable quantities, while analytical bioseparation refers to purification for the sole purpose 
of measuring a component or components of a mixture, and may deal with sample sizes as small 
as a single cell. 
 Stages in Downstream Processing 
A widely recognized heuristic for categorizing downstream processing operations divides them 
into four groups which are applied in order to bring a product from its natural state as a 
component of a tissue, cell or fermentation broth through progressive improvements in purity 
and concentration. 
Removal of insolubles is the first step and involves the capture of the product as a solute in a 
particulate-free liquid, for example the separation of cells, cell debris or other particulate matter 
from fermentation broth containing an antibiotic. Typical operations to achieve this are filtration, 
centrifugation, sedimentation, flocculation, electro-precipitation, and gravity settling. Additional 
operations such as grinding, homogenization, or leaching, required to recover products from 
solid sources such as plant and animal tissues, are usually included in this group. 
Product Isolation is the removal of those components whose properties vary markedly from that 
of the desired product. For most products, water is the chief impurity and isolation steps are 
designed to remove most of it, reducing the volume of material to be handled and concentrating 
the product. Solvent extraction, adsorption, ultrafiltration, and precipitation are some of the unit 
operations involved. 
Product Purification is done to separate those contaminants that resemble the product very 
closely in physical and chemical properties. Consequently steps in this stage are expensive to 
carry out and require sensitive and sophisticated equipment. This stage contributes a significant 
fraction of the entire downstream processing expenditure. Examples of operations include 
affinity, size exclusion, reversed phase chromatography, crystallization and fractional 
precipitation. 
Product Polishing describes the final processing steps which end with packaging of the product 
in a form that is stable, easily transportable and convenient. Crystallization, desiccation, 
lyophilization and spray drying are typical unit operations. Depending on the product and its 
intended use, polishing may also include operations to sterilize the product and remove or 
deactivate trace contaminants which might compromise product safety. Such operations might 
include the removal of viruses or depyrogenation. 
A few product recovery methods may be considered to combine two or more stages. For 
example, expanded bed adsorption accomplishes removal of insolubles and product isolation in a 
single step. Affinity chromatography often isolates and purifies in a single step. 
Cell disruption is a method or process for releasing biological molecules from inside a cell. 
Choice of disruption method 
The production of biologically-interesting molecules using cloning and culturing methods allows 
the study and manufacture of relevant molecules.Except for excreted molecules, cells producing 
molecules of interest must be disrupted. This page discusses various methods. 
 Major factors 
Several factors must be considered. 
 Volume or sample size of cells to be disrupted 
If only a few microliters of sample are available, care must be taken to minimize loss and to 
avoid cross-contamination. 
Disruption of cells, when hundreds or even thousands of liters of material are being processed in 
a production environment, presents a different challenge. Throughput, efficiency, and 
reproducibility are key factors. 
 How many different samples need to be disrupted at one time? 
Frequently when sample sizes are small, there are many samples. As sample sizes increase, 
fewer samples are usually processed. Issues are sample cross contamination, speed of processing, 
and equipment cleaning . 
 How easily are the cells disrupted? 
As the difficulty of disruption increases (e.g. E. coli), more force is required to efficiently disrupt 
the cells. For even more difficult samples (e.g. yeast), there is a parallel increase in the processor 
power and cost. The most difficult samples (e.g. spores) require mechanical forces combined 
with chemical or enzymatic efforts, often with limited disruption efficiency. 
 What efficiency of disruption is required? 
Over-disruption may impact the desired product. For example, if subcellular fractionation studies 
are undertaken, it is often more important to have intact subcellular components, while 
sacrificing disruption efficiency. 
For production scale processes, the time to disrupt the cells and the reproducibility of the method 
become more important factors. 
How stable is the molecule(s) or component that needs to be isolated? 
In general, the cell disruption method is closely matched with the material that is desired from 
the cell studies. It is usually necessary to establish the minimum force of the disruption method 
that will yield the best product. Additionally, once the cells are disrupted, it is often essential to 
protect the desired product from normal biological processes (e.g. proteases) and from oxidation 
or other chemical events. 
 What purification methods will be used following cell disruption? 
It is rare that a cell disruption process produces a directly usable material; in almost all cases, 
subsequent purification events are necessary. Thus, when the cells are disrupted, it is important 
to consider what components are present in the disruption media so that efficient purification is 
not impeded. 
 Is the sample being subjected to the method biohazardous? 
Preparation of cell-free extracts of pathogens presents unique difficulties. Mechanical disruption 
techniques are not always applicable owing to potential biohazard problems associated with 
contamination of equipment and generation of aerosols. 
 Lysis 
For easily disrupted cells such as insect and mammalian cells grown in culture media, a mild 
osmosis-based method for cell disruption (lysis) is commonly used. Quite frequently, simply 
lowering the ionic strength of the media will cause the cells to swell and burst. In some cases it is 
also desirable to add a mild surfactant and some mild mechanical agitation or sonication to 
completely disassociate the cellular components. Due to the cost and relative effort to grow these 
cells, there is often only a small quantity of cells to be processed, and preferred methods for cell 
Page 5


 
RAJALAKSHMI ENGINEERING COLLEGE, THANDALAM 
DEPARTMENT OF BIOTECHNOLOGY 
FINALYEAR-VII SEMESTER SEC A&B 
BT-2401 DOWNSTREAM PROCESSING 
 
 
 
 
 
 
 
Bachelor of Biotechnology 
DEPARTMENT OF BIOTECHNOLOGY 
 
 
PREPARED BY 
 KAVITHA VIJAYARAGHAVAN(BT102) 
LECTURER  
DEPARTMENT OF BIOTECHNOLOGY 
 
 
 
 
UNIT-1 DOWNSTREAM PROCESSING 
 
Downstream processing refers to the recovery and purification of biosynthetic products, 
particularly pharmaceuticals, from natural sources such as animal or plant tissue or fermentation 
broth, including the recycling of salvageable components and the proper treatment and disposal 
of waste. It is an essential step in the manufacture of pharmaceuticals such as antibiotics, 
hormones (e.g. insulin and human growth hormone), antibodies (e.g. infliximab and abciximab) 
and vaccines; antibodies and enzymes used in diagnostics; industrial enzymes; and natural 
fragrance and flavor compounds. Downstream processing is usually considered a specialized 
field in biochemical engineering, itself a specialization within chemical engineering, though 
many of the key technologies were developed by chemists and biologists for laboratory-scale 
separation of biological products. 
Downstream processing and analytical bioseparation both refer to the separation or purification 
of biological products, but at different scales of operation and for different purposes. 
Downstream processing implies manufacture of a purified product fit for a specific use, generally 
in marketable quantities, while analytical bioseparation refers to purification for the sole purpose 
of measuring a component or components of a mixture, and may deal with sample sizes as small 
as a single cell. 
 Stages in Downstream Processing 
A widely recognized heuristic for categorizing downstream processing operations divides them 
into four groups which are applied in order to bring a product from its natural state as a 
component of a tissue, cell or fermentation broth through progressive improvements in purity 
and concentration. 
Removal of insolubles is the first step and involves the capture of the product as a solute in a 
particulate-free liquid, for example the separation of cells, cell debris or other particulate matter 
from fermentation broth containing an antibiotic. Typical operations to achieve this are filtration, 
centrifugation, sedimentation, flocculation, electro-precipitation, and gravity settling. Additional 
operations such as grinding, homogenization, or leaching, required to recover products from 
solid sources such as plant and animal tissues, are usually included in this group. 
Product Isolation is the removal of those components whose properties vary markedly from that 
of the desired product. For most products, water is the chief impurity and isolation steps are 
designed to remove most of it, reducing the volume of material to be handled and concentrating 
the product. Solvent extraction, adsorption, ultrafiltration, and precipitation are some of the unit 
operations involved. 
Product Purification is done to separate those contaminants that resemble the product very 
closely in physical and chemical properties. Consequently steps in this stage are expensive to 
carry out and require sensitive and sophisticated equipment. This stage contributes a significant 
fraction of the entire downstream processing expenditure. Examples of operations include 
affinity, size exclusion, reversed phase chromatography, crystallization and fractional 
precipitation. 
Product Polishing describes the final processing steps which end with packaging of the product 
in a form that is stable, easily transportable and convenient. Crystallization, desiccation, 
lyophilization and spray drying are typical unit operations. Depending on the product and its 
intended use, polishing may also include operations to sterilize the product and remove or 
deactivate trace contaminants which might compromise product safety. Such operations might 
include the removal of viruses or depyrogenation. 
A few product recovery methods may be considered to combine two or more stages. For 
example, expanded bed adsorption accomplishes removal of insolubles and product isolation in a 
single step. Affinity chromatography often isolates and purifies in a single step. 
Cell disruption is a method or process for releasing biological molecules from inside a cell. 
Choice of disruption method 
The production of biologically-interesting molecules using cloning and culturing methods allows 
the study and manufacture of relevant molecules.Except for excreted molecules, cells producing 
molecules of interest must be disrupted. This page discusses various methods. 
 Major factors 
Several factors must be considered. 
 Volume or sample size of cells to be disrupted 
If only a few microliters of sample are available, care must be taken to minimize loss and to 
avoid cross-contamination. 
Disruption of cells, when hundreds or even thousands of liters of material are being processed in 
a production environment, presents a different challenge. Throughput, efficiency, and 
reproducibility are key factors. 
 How many different samples need to be disrupted at one time? 
Frequently when sample sizes are small, there are many samples. As sample sizes increase, 
fewer samples are usually processed. Issues are sample cross contamination, speed of processing, 
and equipment cleaning . 
 How easily are the cells disrupted? 
As the difficulty of disruption increases (e.g. E. coli), more force is required to efficiently disrupt 
the cells. For even more difficult samples (e.g. yeast), there is a parallel increase in the processor 
power and cost. The most difficult samples (e.g. spores) require mechanical forces combined 
with chemical or enzymatic efforts, often with limited disruption efficiency. 
 What efficiency of disruption is required? 
Over-disruption may impact the desired product. For example, if subcellular fractionation studies 
are undertaken, it is often more important to have intact subcellular components, while 
sacrificing disruption efficiency. 
For production scale processes, the time to disrupt the cells and the reproducibility of the method 
become more important factors. 
How stable is the molecule(s) or component that needs to be isolated? 
In general, the cell disruption method is closely matched with the material that is desired from 
the cell studies. It is usually necessary to establish the minimum force of the disruption method 
that will yield the best product. Additionally, once the cells are disrupted, it is often essential to 
protect the desired product from normal biological processes (e.g. proteases) and from oxidation 
or other chemical events. 
 What purification methods will be used following cell disruption? 
It is rare that a cell disruption process produces a directly usable material; in almost all cases, 
subsequent purification events are necessary. Thus, when the cells are disrupted, it is important 
to consider what components are present in the disruption media so that efficient purification is 
not impeded. 
 Is the sample being subjected to the method biohazardous? 
Preparation of cell-free extracts of pathogens presents unique difficulties. Mechanical disruption 
techniques are not always applicable owing to potential biohazard problems associated with 
contamination of equipment and generation of aerosols. 
 Lysis 
For easily disrupted cells such as insect and mammalian cells grown in culture media, a mild 
osmosis-based method for cell disruption (lysis) is commonly used. Quite frequently, simply 
lowering the ionic strength of the media will cause the cells to swell and burst. In some cases it is 
also desirable to add a mild surfactant and some mild mechanical agitation or sonication to 
completely disassociate the cellular components. Due to the cost and relative effort to grow these 
cells, there is often only a small quantity of cells to be processed, and preferred methods for cell 
disruption tend to be a manual mechanical homogenizer, nitrogen burst methods, or ultrasound 
with a small probe. Because these methods are performed under very mild conditions, they are 
often used for subcellular fractionation studies. 
For cells that are more difficult to disrupt, such as bacteria, yeast, and algae, hypotonic shock 
alone generally is insufficient to open the cell and stronger methods must be used, due to the 
presence of cell walls that must be broken to allow access to intracellular components. These 
stronger methods are discussed below. 
Laboratory-scale methods 
 Enzymatic method 
The use of enzymatic methods to remove cell walls is well-established for preparing cells for 
disruption, or for preparation of protoplasts (cells without cell walls) for other uses such as 
introducing cloned DNA or subcellular organelle isolation. The enzymes are generally 
commercially available and, in most cases, were originally isolated from biological sources (e.g. 
snail gut for yeast or lysozyme from hen egg white). The enzymes commonly used include 
lysozyme, lysostaphin, zymolase, cellulase, mutanolysin, glycanases, proteases, mannase etc. 
Disadvantages include: 
? Not always reproducible.  
In addition to potential problems with the enzyme stability, the susceptibility of the cells to the 
enzyme can be dependent on the state of the cells. For example, yeast cells grown to maximum 
density (stationary phase) possess cell walls that are notoriously difficult to remove whereas 
midlog growth phase cells are much more susceptible to enzymatic removal of the cell wall. 
? Not usually applicable to large scale.  
Large scale applications of enzymatic methods tend to be costly and irreproducible. 
The enzyme must be removed (or inactivated) to allow cell growth or permit isolation of the 
desired material. 
 Bead method 
Another common laboratory-scale mechanical method for cell disruption uses small glass, 
ceramic, or steel beads and a high level of agitation by stirring or shaking of the mix. The 
method, often referred to as "beadbeating", works well for all types of cellular material - from 
spores to animal and plant tissues. 
At the lowest levels of the technology, beads are added to the cell or tissue suspension in a 
testtube and the sample is mixed on a common laboratory vortex mixer. While processing time is 
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