All questions of Biotechnology for Biotechnology Engineering (BT) Exam

Which of the following is not correct about restriction enzymes
  • a)
    All restriction enzymes do not cut within recognition sites
  • b)
    Restriction sites are always palindromic
  • c)
    Restriction enzymes are synthesized in mammalian cells
  • d)
    Two restriction enzymes can not cut at same sites
Correct answer is option 'A,B'. Can you explain this answer?

Madhavan Iyer answered
Restriction enzymes are not synthesized by mammals but they form immune defence of bacterial cells. It is however true that every restriction site is palindromic, read same from both the ends. Two restriction enzymes can cut at same sites like isoschizomers. Also, there are three prominent classes of restriction enzymes, type I which cut 1000 bp away from recognition sites, type II which cut within the recognition sites, and type III which cut approximately 50 bp away from recognition sites, hence statement 1 is not correct.

A restriction site “GAATTC” is recognized by an enzyme EcoRI, How many sites of this sequence are probable in a cloning vector, pBR322 of size 4361 bp.
  • a)
    One
  • b)
    Two
  • c)
    Three
  • d)
    Four
Correct answer is option 'A'. Can you explain this answer?

Jay Nambiar answered
The probability of restriction site in a given DNA is calculated by formula
One in 4n, where n is the number of base pairs in a site
i.e. one site in 4096 bp,hence a DNA of size 4361 is likely to possess only one site based on random probability 

Match the technique with its appropriate application from the list of options given below:
  • a)
    A-T, B-Q, C-S, D-R   
  • b)
    A-T, B-T, C-S, D-R
  • c)
    A-S, B-T, C-Q, D-R
  • d)
    A-Q, B-S, C-R, D-T
Correct answer is option 'B'. Can you explain this answer?

Vikram Kapoor answered
  • Footprinting (A): This technique, often referred to as "DNase footprinting," is used to study the binding sites of DNA-binding proteins such as transcription factors on DNA. So the appropriate match would be (T) Identification of binding sites of transcription factor.
  • ChIP Assay (B): Chromatin immunoprecipitation (ChIP) assay is used to investigate the interaction between proteins and DNA in the cell. This technique can identify the binding sites of DNA-associated proteins, such as transcription factors, on the genome. Therefore, the match is (T) Identification of binding sites of transcription factor.
  • ELISA (C): The enzyme-linked immunosorbent assay (ELISA) is a test that uses antibodies and color change to identify a substance. It is commonly used for the detection and quantification of proteins, including hormones and antibodies. Thus, the match would be (S) Quantification of transgene expression if referring to a protein product of a transgene.
  • Gel Filtration Chromatography (D): This is a type of size exclusion chromatography that separates proteins based on their size, and it's often used for molecular weight determination. Therefore, the match is (R) Molecular weight determination.
So, the matches are:
  • (A) Foot printing - (T) Identification of binding sites of transcription factor
  • (B) ChIP Assay - (T) Identification of binding sites of transcription factor
  • (C) ELISA - (S) Quantification of transgene expression
  • (D) Gel Filtration Chromatography - (R) Molecular weight determination

Which of the following partial amino acid sequence from a protein whose gene you wish to clone would be most useful in designing an oligonucleotide probe to screen a cDNA library.
P = Met-Lev-Arg-Leu,    Q = Met-Trp-Cys-Trp
  • a)
    Only P
  • b)
    Only Q
  • c)
    Both P & Q
  • d)
    None
Correct answer is option 'B'. Can you explain this answer?

Met-Trp-Cys-Trp is the best choice for reverse translation into a DNA sequence because it contains fewer amino acid residues having multiple codon. Trp, Met have one codon each and cys has two, while Leu and Arg each have dic codon. 

What is the clinical application of monoclonal antibodies?
  • a)
    Biosensors 
  • b)
    Transplant rejection 
  • c)
    Infectious disease 
  • d)
    Purification of drugs
Correct answer is option 'D'. Can you explain this answer?

Shubham Rane answered
Monoclonal antibodies have become an important tool in the field of medicine due to their clinical applications. One of the key applications of monoclonal antibodies is in the purification of drugs.

Monoclonal antibodies are laboratory-produced molecules that can mimic the immune system's ability to fight off harmful pathogens such as bacteria and viruses. These antibodies are designed to bind to specific molecules, known as antigens, which are present on the surface of cells or pathogens.

In the context of drug purification, monoclonal antibodies can be used to specifically bind and remove impurities from a drug formulation. This process is known as affinity chromatography.

Here is a detailed explanation of how monoclonal antibodies are used in the purification of drugs:

1. Affinity chromatography:
- Monoclonal antibodies are immobilized on a solid support, such as a column or resin.
- The drug formulation is passed through the column, allowing the monoclonal antibodies to specifically bind to the target drug molecules.
- Non-target molecules, including impurities, are washed away, while the target drug molecules remain bound to the monoclonal antibodies.
- The target drug molecules can then be eluted from the column, resulting in a purified drug formulation.

2. Specificity and selectivity:
- Monoclonal antibodies exhibit high specificity and selectivity towards their target molecules. This ensures that only the desired drug molecules are captured and purified, while other molecules are not affected.
- This specificity and selectivity is crucial in the pharmaceutical industry, as it allows for the production of pure and safe drugs.

3. Increased yield and purity:
- The use of monoclonal antibodies in drug purification can significantly increase the yield and purity of the final drug product.
- By selectively removing impurities, monoclonal antibodies help to ensure that the drug formulation meets the required quality standards.

4. Potential for personalized medicine:
- Monoclonal antibodies can be engineered to target specific molecules or cell types, allowing for personalized medicine.
- This means that drugs can be tailored to the individual patient, increasing their efficacy and reducing potential side effects.

In summary, the clinical application of monoclonal antibodies in the purification of drugs is an important process that allows for the production of pure and safe drug formulations. By selectively binding to target drug molecules and removing impurities, monoclonal antibodies help to increase the yield and purity of drugs, ensuring their effectiveness and safety for patients.

After using the Sanger method tor sequencing DNA (dideoxy nucleotide method), you observe the following autoradiogram
From the autoradiogram determine the base sequence of the template strand.
  • a)
    3'-TACGT-5'
  • b)
    5'-TGCAT-3'
  • c)
    3'-ACGTT-5'
  • d)
    5'-ATGCA-3'
Correct answer is option 'D'. Can you explain this answer?

Rohan Desai answered
The Sangers gels are read from bottom to top to obtain a sequence of DNA. however this is the sequence of newly synthesized strand and template is complementary to this. On reading the gel from bottom we get 5 -TGC'AT-3 '. while complement ary to this would be 3’ACGTA5’, which can be written from 5’to 3’ as 5’ATGCA3’.

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