Page 1
Tools and
Techniques:
Basic Concepts
Unit V
Chapter 12
Tools and Techniques
Considering the fact that biotechnology is
an experimental science and involves a lot of
experimentations; therefore, research in this ??eld
depends highly on sophisticated laboratory methods.
Advances in biotechnology were closely followed by
the development of newer tools and techniques in
biological sciences. These new methods opened new
avenues for research and investigation in the ??eld
of biotechnology. It is, thus, important to appreciate
the experimental tools available to biotechnologists
in order to understand the progress and future
directions of this rapidly moving area of science.
Some of the important experimental methods
including methods of cell and molecular biology
will be discussed in this unit.
Chapter 12.indd 279 09/01/2025 15:17:36
Reprint 2025-26
Page 2
Tools and
Techniques:
Basic Concepts
Unit V
Chapter 12
Tools and Techniques
Considering the fact that biotechnology is
an experimental science and involves a lot of
experimentations; therefore, research in this ??eld
depends highly on sophisticated laboratory methods.
Advances in biotechnology were closely followed by
the development of newer tools and techniques in
biological sciences. These new methods opened new
avenues for research and investigation in the ??eld
of biotechnology. It is, thus, important to appreciate
the experimental tools available to biotechnologists
in order to understand the progress and future
directions of this rapidly moving area of science.
Some of the important experimental methods
including methods of cell and molecular biology
will be discussed in this unit.
Chapter 12.indd 279 09/01/2025 15:17:36
Reprint 2025-26
Frederick Sanger
(1918-2013)
Frederick Sanger (1918–2013) was
a British biochemist and molecular
biologist who had two Nobel Prizes
in Chemistry to his credit. He was
awarded the ??rst Nobel Prize in
1958 for the discovery of structure
of insulin molecule, and second
Nobel Prize in 1980 for his work (in
collaboration with Paul Berg and
Walter Gilbert) on the determination
of base sequences of nucleic acids.
He is, by far, the most in??uential
biochemist in history. His technique
of deciphering DNA sequences
was based on ‘read-off’ methods
using acrylamide gel. In 1977,
Sanger sequenced the genome of
bacteriophage FX174, the ??rst
genome to be completely sequenced.
Most of his later contributions laid
the foundation of molecular biology
and are being utilised in every
biotechnology application.
Chapter 12.indd 280 09/01/2025 15:17:38
Reprint 2025-26
Page 3
Tools and
Techniques:
Basic Concepts
Unit V
Chapter 12
Tools and Techniques
Considering the fact that biotechnology is
an experimental science and involves a lot of
experimentations; therefore, research in this ??eld
depends highly on sophisticated laboratory methods.
Advances in biotechnology were closely followed by
the development of newer tools and techniques in
biological sciences. These new methods opened new
avenues for research and investigation in the ??eld
of biotechnology. It is, thus, important to appreciate
the experimental tools available to biotechnologists
in order to understand the progress and future
directions of this rapidly moving area of science.
Some of the important experimental methods
including methods of cell and molecular biology
will be discussed in this unit.
Chapter 12.indd 279 09/01/2025 15:17:36
Reprint 2025-26
Frederick Sanger
(1918-2013)
Frederick Sanger (1918–2013) was
a British biochemist and molecular
biologist who had two Nobel Prizes
in Chemistry to his credit. He was
awarded the ??rst Nobel Prize in
1958 for the discovery of structure
of insulin molecule, and second
Nobel Prize in 1980 for his work (in
collaboration with Paul Berg and
Walter Gilbert) on the determination
of base sequences of nucleic acids.
He is, by far, the most in??uential
biochemist in history. His technique
of deciphering DNA sequences
was based on ‘read-off’ methods
using acrylamide gel. In 1977,
Sanger sequenced the genome of
bacteriophage FX174, the ??rst
genome to be completely sequenced.
Most of his later contributions laid
the foundation of molecular biology
and are being utilised in every
biotechnology application.
Chapter 12.indd 280 09/01/2025 15:17:38
Reprint 2025-26
12.1 Microscopy Biological studies and explorations cannot be imagined
without a microscope as it enables us to see something
which is beyond the scope of our eyes. Today, the technique
of microscopy has become so much advanced that a
researcher can not only see a highly magni??ed image of
a very minute structure but also can visualise the three
dimensional structure of such objects. Using powerful
electron microscopic techniques, even the DNA molecule
of bacteria and viruses have been visualised.
The use of ??rst microscope dates back to 1665 when
the British physicist Robert Hooke designed a simple
microscope using combination of magnifying lenses (Fig.
12.1) and observed the slices of cork, and coined the term
‘Cellulae’ or ‘cell’ to that honeycomb like structure. You
are aware that Matthias Jacob Schleiden and Theodor
Schwann proposed cell theroy in 1838 on the basis of
observation of cells in plants and animals.
12.1 Microscopy
12.2 Centrifugation
12.3 Electrophoresis
12.4 Enzyme-linked
Immunosorbent
Assay (ELISA)
12.5 Chromatography
12.6 Spectroscopy
12.7 Mass Spectrometry
12.8 Fluorescence in situ
hybridisation (FISH)
12.9 DNA Sequencing
12.10 DNA Microarray
12.11 Flow Cytometry
Tools and
Techniques
Chapter 12
Chapter 12.indd 281 09/01/2025 15:17:38
Reprint 2025-26
Page 4
Tools and
Techniques:
Basic Concepts
Unit V
Chapter 12
Tools and Techniques
Considering the fact that biotechnology is
an experimental science and involves a lot of
experimentations; therefore, research in this ??eld
depends highly on sophisticated laboratory methods.
Advances in biotechnology were closely followed by
the development of newer tools and techniques in
biological sciences. These new methods opened new
avenues for research and investigation in the ??eld
of biotechnology. It is, thus, important to appreciate
the experimental tools available to biotechnologists
in order to understand the progress and future
directions of this rapidly moving area of science.
Some of the important experimental methods
including methods of cell and molecular biology
will be discussed in this unit.
Chapter 12.indd 279 09/01/2025 15:17:36
Reprint 2025-26
Frederick Sanger
(1918-2013)
Frederick Sanger (1918–2013) was
a British biochemist and molecular
biologist who had two Nobel Prizes
in Chemistry to his credit. He was
awarded the ??rst Nobel Prize in
1958 for the discovery of structure
of insulin molecule, and second
Nobel Prize in 1980 for his work (in
collaboration with Paul Berg and
Walter Gilbert) on the determination
of base sequences of nucleic acids.
He is, by far, the most in??uential
biochemist in history. His technique
of deciphering DNA sequences
was based on ‘read-off’ methods
using acrylamide gel. In 1977,
Sanger sequenced the genome of
bacteriophage FX174, the ??rst
genome to be completely sequenced.
Most of his later contributions laid
the foundation of molecular biology
and are being utilised in every
biotechnology application.
Chapter 12.indd 280 09/01/2025 15:17:38
Reprint 2025-26
12.1 Microscopy Biological studies and explorations cannot be imagined
without a microscope as it enables us to see something
which is beyond the scope of our eyes. Today, the technique
of microscopy has become so much advanced that a
researcher can not only see a highly magni??ed image of
a very minute structure but also can visualise the three
dimensional structure of such objects. Using powerful
electron microscopic techniques, even the DNA molecule
of bacteria and viruses have been visualised.
The use of ??rst microscope dates back to 1665 when
the British physicist Robert Hooke designed a simple
microscope using combination of magnifying lenses (Fig.
12.1) and observed the slices of cork, and coined the term
‘Cellulae’ or ‘cell’ to that honeycomb like structure. You
are aware that Matthias Jacob Schleiden and Theodor
Schwann proposed cell theroy in 1838 on the basis of
observation of cells in plants and animals.
12.1 Microscopy
12.2 Centrifugation
12.3 Electrophoresis
12.4 Enzyme-linked
Immunosorbent
Assay (ELISA)
12.5 Chromatography
12.6 Spectroscopy
12.7 Mass Spectrometry
12.8 Fluorescence in situ
hybridisation (FISH)
12.9 DNA Sequencing
12.10 DNA Microarray
12.11 Flow Cytometry
Tools and
Techniques
Chapter 12
Chapter 12.indd 281 09/01/2025 15:17:38
Reprint 2025-26
282
Biotechnology 12.1.1 Magni??cation and Resolution
Let us now focus on the principle on which the technique of
microscopy is based. Two optical properties are extremely
important for an optical instrument like microscope. One is
the power to magnify and the other is the ability to resolve.
Magni??cation or magnifying power of a microscope is
the ability by which the retinal image size can be increased.
Thus in simple terms magni??cation is—
Size of retinal image with the help of microscope
__________________________________________________
Size of the retinal image without using microscope
You may have studied in physics that magni??cation (M) of
a lens is measured as per the following formula (in which
f is focal length of the lens and d is the distance of object
from the lens).
Fig. 12.1: Microscope
Revolving nose
piece
Objective
Condenser
Stage
Sub stage
Mirror
Base
Inclination joint
Coarse adjustment
knob
Fine adjustment
knob
Body tube
Eyepiece
Arm
M =
f
f-d
Chapter 12.indd 282 09/01/2025 15:17:38
Reprint 2025-26
Page 5
Tools and
Techniques:
Basic Concepts
Unit V
Chapter 12
Tools and Techniques
Considering the fact that biotechnology is
an experimental science and involves a lot of
experimentations; therefore, research in this ??eld
depends highly on sophisticated laboratory methods.
Advances in biotechnology were closely followed by
the development of newer tools and techniques in
biological sciences. These new methods opened new
avenues for research and investigation in the ??eld
of biotechnology. It is, thus, important to appreciate
the experimental tools available to biotechnologists
in order to understand the progress and future
directions of this rapidly moving area of science.
Some of the important experimental methods
including methods of cell and molecular biology
will be discussed in this unit.
Chapter 12.indd 279 09/01/2025 15:17:36
Reprint 2025-26
Frederick Sanger
(1918-2013)
Frederick Sanger (1918–2013) was
a British biochemist and molecular
biologist who had two Nobel Prizes
in Chemistry to his credit. He was
awarded the ??rst Nobel Prize in
1958 for the discovery of structure
of insulin molecule, and second
Nobel Prize in 1980 for his work (in
collaboration with Paul Berg and
Walter Gilbert) on the determination
of base sequences of nucleic acids.
He is, by far, the most in??uential
biochemist in history. His technique
of deciphering DNA sequences
was based on ‘read-off’ methods
using acrylamide gel. In 1977,
Sanger sequenced the genome of
bacteriophage FX174, the ??rst
genome to be completely sequenced.
Most of his later contributions laid
the foundation of molecular biology
and are being utilised in every
biotechnology application.
Chapter 12.indd 280 09/01/2025 15:17:38
Reprint 2025-26
12.1 Microscopy Biological studies and explorations cannot be imagined
without a microscope as it enables us to see something
which is beyond the scope of our eyes. Today, the technique
of microscopy has become so much advanced that a
researcher can not only see a highly magni??ed image of
a very minute structure but also can visualise the three
dimensional structure of such objects. Using powerful
electron microscopic techniques, even the DNA molecule
of bacteria and viruses have been visualised.
The use of ??rst microscope dates back to 1665 when
the British physicist Robert Hooke designed a simple
microscope using combination of magnifying lenses (Fig.
12.1) and observed the slices of cork, and coined the term
‘Cellulae’ or ‘cell’ to that honeycomb like structure. You
are aware that Matthias Jacob Schleiden and Theodor
Schwann proposed cell theroy in 1838 on the basis of
observation of cells in plants and animals.
12.1 Microscopy
12.2 Centrifugation
12.3 Electrophoresis
12.4 Enzyme-linked
Immunosorbent
Assay (ELISA)
12.5 Chromatography
12.6 Spectroscopy
12.7 Mass Spectrometry
12.8 Fluorescence in situ
hybridisation (FISH)
12.9 DNA Sequencing
12.10 DNA Microarray
12.11 Flow Cytometry
Tools and
Techniques
Chapter 12
Chapter 12.indd 281 09/01/2025 15:17:38
Reprint 2025-26
282
Biotechnology 12.1.1 Magni??cation and Resolution
Let us now focus on the principle on which the technique of
microscopy is based. Two optical properties are extremely
important for an optical instrument like microscope. One is
the power to magnify and the other is the ability to resolve.
Magni??cation or magnifying power of a microscope is
the ability by which the retinal image size can be increased.
Thus in simple terms magni??cation is—
Size of retinal image with the help of microscope
__________________________________________________
Size of the retinal image without using microscope
You may have studied in physics that magni??cation (M) of
a lens is measured as per the following formula (in which
f is focal length of the lens and d is the distance of object
from the lens).
Fig. 12.1: Microscope
Revolving nose
piece
Objective
Condenser
Stage
Sub stage
Mirror
Base
Inclination joint
Coarse adjustment
knob
Fine adjustment
knob
Body tube
Eyepiece
Arm
M =
f
f-d
Chapter 12.indd 282 09/01/2025 15:17:38
Reprint 2025-26
283
t ools and t echnologies : Basic c oncepts Normally, the microscope which is used in the laboratory
is a compound microscope in which two sets of lenses are
there. One is called objective lens, which remains close to
the object to be seen, and the other is eyepiece through
which the observer sees. It is needless to mention that the
object, objective lens, eyepiece, and the eye of the observer
have to be in the same line for the passage of light to
see the magni??ed image of the object. In simple words,
magni??cation of a microscope is product of the magnifying
power of the objective lens and the magnifying power of
the eyepiece (M
o
× M
e
).
Resolving power is another important property of a
microscope, which is the ability to form separate images
of the two objects situated very close to each other. It can
be measured by the smallest distance between two points.
12.1.2 Functioning of a light microscope
You have already studied about the structure of a compound
microscope in previous class, yet to recapitulate, as you
can see in the Fig. 12.1, a compound microscope consists
of a base on which a stage is ??tted with a central hole.
Attached to the base is an arm to which a body tube is ??tted
in such a way that it aligns with the hole of the stage. At the
lower end of the body tube, a nose piece is ??tted on which
two to four objective lenses may be present. By rotating the
nose piece, one of the objective lenses can be placed above
the hole present on the stage where object to be seen is
placed on a glass slide. At the upper end of the body tube,
an eye piece is ??tted through which an observer can see
under the microscope. There are adjustment screws (coarse
and ??ne) on the arm which facilitate in adjusting the
distance of objective lens from the object present on the
stage. Below the stage, there is a source of light (which may
be a re??ective mirror or a bulb to illuminate the object and
facilitate the formation of image through objective lens and
eyepiece) (Fig. 12.2). In addition, there is a condenser
present between the light source and the stage, which is
important for focusing light on the object. You might have
observed that both objective lenses and eye pieces are of
different magnifying power. In a student microscope the
eyepiece has the magnifying power of 10 × or 15 × and that
of the different objective lenses ??tted on the nose piece are
of 4 ×, 10 ×, 40/45 × and 100 ×. The technique of microscopy
Chapter 12.indd 283 09/01/2025 15:17:38
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